Articles
FluoroFinder News & Updates
From flow cytometry research and experimental design trends to FluoroFinder tool updates and industry applications, we explore it all in our blog.
Compensation in Flow Cytometry
Fluorescent cellular analytical technologies allow us to “see” beyond what was historically possible with histological stains or morphological scatter profiles. In the early days, microscopy employed excitation sources like arc lamps, isolating specific wavelengths of...
Tips for Fluorophore Selection
Choosing the right fluorophores is critical for reliable results Fluorescent detection offers significant advantages, including multiplexing capability, superior sensitivity, and a broader dynamic linear range compared to other detection methods. However, the...
Direct vs Indirect Detection in Microscopy
Understanding the advantages and disadvantages of different immunodetection strategies is important to achieve accurate results. Microscopy-based techniques such as immunocytochemistry (ICC) and immunohistochemistry (IHC) often use fluorophore or enzyme-labeled...
Stain Index for Flow Cytometry – Explained
When designing a flow cytometry experiment, it is important to account for the relative brightness of each fluorescent label on your specific instrument. Ideally, brighter fluorophores should be assigned to weakly expressed markers, while dimmer fluorophores should...
Confocal vs Super-Resolution Microscopy
Advanced microscopy techniques enable deeper imaging Advanced microscopy platforms are becoming more widespread for the depth of information they provide. Among these newer modalities, confocal microscopy has risen in popularity for imaging thick...
5 Recipes for Flow Cytometry Buffers
Whether preformulated or made in-house, buffers are integral to flow cytometry success Flow cytometry allows researchers to characterize individual cells using fluorophore-labeled antibodies for detecting targets of interest. Sample preparation, antibody...
Computational Microscopy
Non-conventional optics and advanced algorithms are extending the capabilities of classic microscopy. For centuries, researchers have tried to improve the resolution and sensitivity of optical microscopy. Over time, advances in fluorescence imaging modalities...
Take Control of Your Flow Cytometry Assay
Flow cytometry controls must address multiple sources of variation Flow cytometry requires more controls than other immunoassay techniques because it accounts for a greater number of potential sources of variation. In addition to experimental controls that...
Tandem Dyes
The commercial availability of antibody-linked fluorescent dyes has expanded rapidly over the past decade. Where researchers were once limited to a handful of common dyes (FITC, PE, APC, PerCP, etc.), they can now choose from an extensive list of fluorescent dye lines...
Fluorescence Recovery After Photobleaching
Fluorescence recovery after photobleaching is a technique for characterizing the mobility of cellular molecules Fluorescence recovery after photobleaching (FRAP), also known as fluorescence redistribution after photobleaching, is a microscopy-based technique...
Optimizing Your Immunophenotyping Assay
Antibody conjugate panels must be designed with care to ensure accurate results Immunophenotyping is a flow cytometry-based technique which uses fluorophore-labeled antibodies for identifying different cell types within a heterogeneous population. While some cell...
Advances in Microscopy
Microscopy is comprised of many innovative technologies and remains at the forefront of scientific research. Since the invention of the microscope in the late 16th century, there has been a continual push to produce instruments with higher resolution, faster...
Guide to Fixation and Permeabilization
Fixation and permeabilization are key protocol steps for several core immunoassay techniques Immunoassay techniques such as flow cytometry, immunocytochemistry (ICC), and immunohistochemistry (IHC) often require that samples be fixed and/or permeabilized prior to...
Roundup of Spectral Flow Cytometers
The use of spectral flow cytometry is increasing due to the many benefits it affords. Spectral flow cytometry is a relatively new technology that was developed to push the boundaries of traditional flow cytometry. First described in 2004 by researchers at Purdue...
Near-Infrared Fluorophores For Fluorescence Imaging
Near-infrared fluorophores offer several advantages for imaging applications. A major advantage of fluorescent detection is that it enables multiple antibodies to be combined in the same experiment. Using techniques such as immunocytochemistry (ICC) and...
Fantastic Beasts and How To Image Them
Fluorescence microscopy is seeing increased utility for imaging organisms While fluorescence microscopy has long been employed for imaging plated mammalian cells, its use for visualizing organisms is flourishing. In recent years, winning images in Nikon’s annual Small...
Preparing a Single-Cell Suspension for Flow Cytometry
High viabilities, well-preserved antigens, and minimal clumping underpin flow cytometry success Unlike bulk population analysis techniques such as ELISA and Western blot, flow cytometry provides information about individual cells. Although microscopy does this as...
OMIPs
What are OMIPs? Optimized multicolor immunofluorescence panels, commonly known as OMIPs, are highly validated sets of antibodies and reagents that are published, peer-reviewed, and compiled to serve as a resource to the scientific community. OMIP publications often...
Advances in Western Blot Technologies
New approaches to Western blotting techniques overcome performance limitations For over 40 years, researchers have used Western blot for protein identification. Not only does Western Blot provide confirmation that a target of interest is present in a sample, this...
Expansion Microscopy
Expansion Microscopy physically expands biological specimens enabling higher resolution imaging First described in 2015, expansion microscopy is an imaging technique that improves on the resolution of conventional light microscopy by physically expanding the...
Flow Cytometry in Stem Cell Research and Therapy
Identifying distinct stem cell types and monitoring their differentiation is essential for developing novel therapies Stem cell research originated in the 1950s when it was discovered that mice which had received a lethal dose of radiation could recover...
Excluding Dead Cells With a Cell Viability Fluorescent Dye
Excluding dead cells from flow cytometry analysis with a cell viability fluorescent dye is critical for producing accurate results The presence of dead cells in samples that will be analyzed by flow cytometry can affect antibody staining and lead to inaccurate...
Newsletter: Imaging and Analysis of 3D Cell Cultures
Compared to traditional monolayers, 3D cell cultures more closely resemble physiological conditions 2-dimensional (2D) cell cultures consisting of monolayers attached to a flat surface have been a mainstay of scientific research for decades. However, cells grown in...
Newsletter: Considerations for Spectral Flow Cytometry Panel Design
Spectral flow cytometry offers several advantages over conventional flow cytometry but may be more affected by spreading error Spectral flow cytometry was first described in 2004 by the Robinson group at Purdue University Cytometry Laboratories. Since then, several...
Newsletter: Confocal Microscopy and Related Technologies
Confocal microscopy offers several advantages over traditional widefield microscopy and has evolved to meet many different research needs Originally developed by Marvin Minsky in the 1950s to address the problem of light scatter, confocal microscopy has become an...
Newsletter: Distinguishing Cell-Cell Complexes from Singlet Cells
Failure to correctly identify cell-cell complexes can lead to data being misinterpreted and compromise the purity of sorted cell populations Multiparametric flow cytometry allows researchers to detect different cell types within a heterogeneous population. When...
Newsletter: Antibody Selection Guidelines
Choosing the right antibody for the intended application and sample type is critical to producing reliable results Antibodies are essential tools for applications ranging from flow cytometry, immunocytochemistry (ICC), and immunohistochemistry (IHC) to Western...
Newsletter: Comparison of Flow Cytometry Analysis Software
Software packages for viewing and analyzing FCS data files offer different features and benefits Data analysis represents a major source of variation in flow cytometry. Not only is the analysis process highly prone to user subjectivity, but disparities may arise due...
Newsletter: Fluorescent proteins: advantages and disadvantages
Fluorescent proteins have enabled countless scientific discoveries, but they have their limitations For decades, researchers have been fascinated by the ability of certain living organisms to emit light. However, it was not until 1962 that this phenomenon was first...
Newsletter: CRISPR as an Imaging Tool
Repurposing the CRISPR-Cas system for imaging genomic targets in living cells Established methods for cell imaging use fluorophore-labeled antibodies or oligonucleotides to bind proteins or nucleic acids in fixed cells or rely on the engineered expression of...
Introduction to Spectral Overlap and Compensation in Flow Cytometry
Compensation is one of the most important but least understood aspects of multicolor flow cytometry Multicolor flow cytometry allows researchers to characterize complex cellular populations by staining for several cell type specific markers at the same time. However,...
Newsletter: Tyramide Signal Amplification in Microscopy and Spatial Proteomics
Advantages of TSA include increased sensitivity, simplified panel design, and faster time to results Tyramide signal amplification (TSA), also known as catalyzed reporter deposition (CARD) or tyramine amplification technique (TAT), is a method used for detecting...
Newsletter: Past, Present, and Future of Flow Cytometry
Flow cytometry continues to evolve with advances in instrumentation, reagents, and software The first fluorescence-based flow cytometer was developed in 1968 and was commercialized the following year. Since then, the field of flow cytometry has matured rapidly, and...
Newsletter: Fluorescent Probes for Intracellular Calcium Measurement
Studying calcium flux leads to insights into normal physiology and disease Calcium ions (Ca2+) are involved in numerous intracellular signaling cascades and in a broad range of physiological processes. These include neurotransmission, muscle contraction, and hormone...
Newsletter: Cellular Markers for Flow Cytometry Analysis
Marker selection and panel design underpin the accuracy of cellular identification Being able to monitor the presence and relative abundance of different cell types in sample material is essential to understand normal biology and investigate the pathogenesis of...
Newsletter: Dyes for Analyzing the Cell Cycle and Apoptosis
Aberrant cell proliferation and cell death underlie a multitude of disease states Normal tissue homeostasis depends on a critical balance between cell proliferation and cell death. The cell cycle regulates the former, while the latter occurs via controlled...
Newsletter: Fluorophores for Confocal Microscopy
Confocal microscopy is a powerful imaging technique used to study biological specimens. It offers several advantages over conventional widefield microscopy, including the capacity to control depth-of-field and collect serial sections from thick samples. Fluorophores...
Newsletter: Flow Cytometry Applied to Drug Discovery: Critical Reagent Monitoring
Best practices for antibody and fluorophore use safeguard assay performance A defining feature of flow cytometry is its capacity to analyze single cells. This has led to its application across the entire drug development continuum, with recent advances in the field of...
Newsletter: Designing a Fluorescence Microscopy Experiment
For over 100 years, researchers have used fluorescence microscopy to study biological samples like plated cells or tissue sections. Such experiments typically involve using fluorophore-labeled antibodies to recognize and bind targets of interest before imaging with a...
Newsletter: Analysis of Rare Cell Populations
Rare cell types provide novel insights into mechanisms of health and disease Many techniques used for cell-based research rely on bulk analysis, with data being generated from a complex heterogeneous population. The main drawback of these methods is that they can lead...