Flow Cytometry Analysis Software


You should always use FluoroFinder to design your flow experiments, but what software should you use to analyze your results?

While most analysis software will accommodate basic cytometry experiments, many are specialized for use in specific techniques (ie. image cytometry, high throughput, sorting, etc.). We have compiled this useful list of popular flow cytometry analysis software to help you identify the best fit for your experiment.

Featured Software

WinList™ - Verity Software House


WinList 9.0 is a cytometry software designed to be powerful and easy-to-use. WinList continues to raise the bar for data analysis with a great new interface, t-SNE clustering, ‘magic contour’ and ‘sticky’ regions, fabulous 3D graphics, and validated accuracy.

red matter

Red Matter App

Red Matter App is a free flow cytometry analysis software. The beta version went live on August 28, 2017. This is a major new release which brings Red Matter in line with the Data File Standards for Flow Cytometry, Version FCS 3.1 and Gating-ML 2.0 standards.


Free Software List - Purdue Univ. Cytometry Labs

This list is designed to provide comprehensive educational materials in all areas of cytometry, including free flow cytometry software and demonstrations of commercial packages.


CyFlogic - CyFlo

Cyflogic is a flow cytometry data analysis tool for Microsoft Windows enviroment. It has all regular analysis capabilities, such as dot plot, histogram and statistics. In addition, Cyflogic offers new innovative tools for your data analysis.


Flowing Software

Flowing Software is a project which combines high throughput data analysis with flowing usability. Easy-to-use visual interface ensures an effective data analysis with your personal computer!


FlowJo® – FlowJo

FlowJo® is the leading analysis platform for single-cell flow cytometry analysis.  With an intuitive interface, specialized analysis platforms, and open-ended plugin architecture, FlowJo® provides a rich analysis environment that is easy to use, versatile and extensible.  The FlowJo® workspace is a powerful statistical environment that is used for immunophenotyping, cell cycle, proliferation, kinetics studies, quantitative population comparison, or plate screening assays to name a few.


FCS Express 6 - DeNovo Software

FCS Express is the premier flow and image cytometry data analysis software for RUO, IVD and image cytometry analysis.  A modern, Microsoft Office™ style interface combined with powerful analysis capabilities makes FCS Express the tool of choice for both research and clinical labs.


WinList™ - Verity Software House

WinList 9.0 is a cytometry software designed to be powerful and easy-to-use. WinList continues to raise the bar for data analysis with a great new interface, t-SNE clustering, ‘magic contour’ and ‘sticky’ regions, fabulous 3D graphics, and validated accuracy.


BD FACSDiva™ - BD Biosciences

BD FACSDiva™ software is a collection of rich tools for flow cytometer and application setup, data acquisition, and data analysis that help streamline flow cytometry workflows for today’s busy laboratory.


ForeCyt™ - IntelliCyt

Designed from a screening perspective, ForeCyt Software provides plate level annotation, analytics, and results visualization tools not found in traditional flow-based analysis software packages. From linking well data together to combining multiple assay outcomes together to identify “hits”, the time saving features help you get data insights that drive discovery.


CytoBank - CytoBank

Cytobank is built from the ground up on the concept of single-cell analysis, with all data visualizations connected to the individual cell events. This enables unparalleled communication between clinical researchers, scientists, and informaticians that takes full advantage of what cytometry has to offer.


Flowlogic™ - Miltenyi Biotec

The Flowlogic™ Software makes a fast and accurate analysis of big data possible. The integrated statistical analysis and the advanced layout options for publication make secondary software packages unnecessary. The Flowlogic Software provides state of the art features such as batch analysis, flexible gating, offline auto compensation, overlays, and many more. It is designed to work seamlessly in all JAVA-supported operating systems such as Windows®, Mac OS®X, and Linux®.


Kaluza™ - Beckman Coulter

With features designed to simplify life in the lab, Kaluza aims to provide a greater understanding of the data generated by modern cytometers. Kaluza technology offers real-time analysis of high content files to free up valuable time for discovery.


Attune NxT - Thermo Fisher Scientific

The Attune NxT software enables powerful user-defined experimental analysis via an intuitive, easy-to-use interface. Advanced tools are provided for both acquisition and analysis that are simple enough for users at all experience levels.