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FluoroFinder News & Updates  

From flow cytometry research and experimental design trends to FluoroFinder tool updates and industry applications, we explore it all in our blog.  

New Fluorescent Dyes of 2024

New Fluorescent Dyes of 2024

Fluorescent detection is one of the most powerful tools available to researchers. Not only does it offer the advantages of high sensitivity, simple operation, and the capacity for multiplexing, but it also allows for capturing dynamic biological processes in...

Multiphoton Microscopy

Multiphoton Microscopy

The cerebral cortex is between 2-4 millimeters thick depending on the region of the brain. In one cubic millimeter of human temporal cortex, there are 57,000 cells, 150 million synapses and 230 millimeters of blood vessels1. The typical thickness of a tissue slice for...

Autofluorescence in Flow Cytometry

Autofluorescence in Flow Cytometry

There is light inside our cells. Each cell relies upon a unique array of vitamins, metabolic cofactors ,and aromatic amino acid-based proteins. Many of these molecules exhibit unique fluorescent properties, collectively known as endogenous autofluorescence. The...

Amplification and Background Reduction Techniques

Amplification and Background Reduction Techniques

One of the most common complaints when using fluorescently-labeled antibodies for staining biological samples is that the specific signal is too low. Another is that the background is too high, obscuring detection of the target. We spoke with Eric Torres, Ph.D.,...

Recombinant Antibodies in Flow Cytometry

Recombinant Antibodies in Flow Cytometry

Recombinant antibodies have become indispensable tools for flow cytometry due to the advantages that they offer over traditional polyclonal and monoclonal antibodies. We spoke with Mathilde de Jong, Ph.D., Product Manager for Flow Antibodies at Miltenyi Biotec, and...

DNA-PAINT and Related Methods

DNA-PAINT and Related Methods

DNA-PAINT (DNA points accumulation for imaging in nanoscale topography) is a super-resolution microscopy technique that exploits the transient binding of fluorescently labeled DNA probes. It has been widely adopted for scientific research owing to its accessibility,...

Flow Cytometry Controls

Flow Cytometry Controls

Flow cytometry requires more controls than most other immunoassay techniques because it must account for more potential sources of variation. In addition to experimental controls, which are used to verify the specificity of any staining and ensure assay consistency,...

Camels, Lamprey, and Chickens, Oh My!

Camels, Lamprey, and Chickens, Oh My!

It has been almost half a century since Georges Köhler and Cesar Milstein first described hybridoma technology, which is still widely used for producing monoclonal antibodies today. Over the years, the methodology has evolved and alternative approaches have been...

Cyclical Immunofluorescence Platforms and Reagents

Cyclical Immunofluorescence Platforms and Reagents

When using established methods for immunofluorescent staining of tissue sections, the need to avoid spectral overlap limits the number of markers that can be detected. This can mean that important information is missed, which is of particular significance when working...

Functional Probes for Flow Cytometry

Functional Probes for Flow Cytometry

Functional probes are essential tools for flow cytometry, with utility for studying a wide array of cellular processes. Here, we speak with Alexis Madrid, Ph.D., Assistant Director of Bioscience at Biotium and Chris Manning, Associate Director, Flow Cytometry at Cell...

What Makes a Good Conjugate…Great

What Makes a Good Conjugate…Great

Author: Columbia Biosciences   Background: Over the course of their careers, most researchers in the life sciences or associated fields will perform an experiment or assay that uses a conjugate. These include fluorescent conjugates in flow cytometry (FCS) or...

FRAP (Fluorescence Recovery After Photobleaching)

FRAP (Fluorescence Recovery After Photobleaching)

Fluorescence recovery after photobleaching is a technique for characterizing the mobility of cellular molecules   Fluorescence recovery after photobleaching (FRAP), also known as fluorescence redistribution after photobleaching, is a microscopy-based technique...

2D vs 3D Cell Cultures

2D vs 3D Cell Cultures

Two-dimensional (2D) cell culture represents a cornerstone of scientific research due to its relative simplicity and the establishment of standard techniques over time. However, its position is under threat from 3D cell culture for the more physiologically relevant...

Functional Probes for Live-Cell Imaging

Functional Probes for Live-Cell Imaging

Cellular function encompasses the basic processes a cell must undertake to do it’s assigned job. That could include protein production, enzymatic degradation, proliferation, apoptosis, cell signaling, mitochondrial respiration, buffering reactive oxygen species, etc,...

Families of Different Fluorophore Chemistry

Families of Different Fluorophore Chemistry

So many new fluorophores have been released in recent years, it can be hard to keep track of how they are all similar or if any are truly novel. Sometimes, a company will create a new brand name for a fluorescent chemistry that is already commonly used which can make...

Multiparameter Fluorescence Imaging

Multiparameter Fluorescence Imaging

Multiparameter fluorescence imaging offers many advantages for scientific research. Not only does it use significantly less sample than generating a series of single-analyte images, but it also saves time and can provide a more complete picture of the system in...

Intracellular Flow Cytometry

Intracellular Flow Cytometry

Although intracellular flow cytometry evolved more recently than surface staining, it is far from new. Reports dating back almost 50 years describe the use of intracellular flow cytometry to track the cell cycle, through differential staining of DNA and RNA with...

Definitive Phenotypes in Hematopoeisis

Definitive Phenotypes in Hematopoeisis

Standardization may not be the most exciting or cutting-edge topic in biomedical research but in an era where we lament the lack of reproducibility and distribute blame to reagents, sample prep and general technical know-how, standardization is something every...

Overcoming Common Challenges with Fluorescent IHC

Overcoming Common Challenges with Fluorescent IHC

Immunohistochemistry (IHC) is an antibody-based technique for detecting specific analytes in tissue sections. Because the tissue architecture is preserved, it is possible to study the distribution and relative abundance of targets of interest, both in the context of...

Spectral Panel Design

Spectral Panel Design

Whether you are using a traditional cytometer that employs compensation and does not exceed 18 colors or a spectral cytometer that employs an unmixing algorithm and has the potential, currently, to analyze 50 color panels, the basic tenets of flow cytometry panel...

Expansion of Fluorophores for Spectral Flow Cytometry

Expansion of Fluorophores for Spectral Flow Cytometry

In 2004, Perfetto and Roederer published the first paper detailing a 17-color flow cytometry experiment by incorporating a relatively new octagon emission array off the violet 405nm laser (1). The additional laser and 8 additional channels for violet excited...

Fluorophores for Super-Resolution Microscopy

Fluorophores for Super-Resolution Microscopy

The selection of method and fluorophores for super-resolution microscopy depends on several considerations.    Fluorescence microscopy is one of the most widely used imaging modalities for scientific research owing to its capacity for multiplexed detection and its...

Cell Sorting in Stem Cell Research

Cell Sorting in Stem Cell Research

Stem cells offer vast potential for new medical treatments   With the unique abilities to self-renew and rebuild functional tissues, stem cells have long been of interest to researchers as potential tools for regenerative medicine. 2006 saw a major turning point...

Spatial-Omics

Spatial-Omics

Multimodal spatial profiling at a single-cell level promises to transform scientific research   Single-cell analysis techniques such as fluorescence-activated cell sorting (FACS) and single-cell DNA and RNA sequencing have broadened researchers’ understanding of...

Spillover vs Complexity Index

Spillover vs Complexity Index

What is Spectral Spillover? In flow cytometry, spectral spillover occurs when the emission of one fluorophore overlaps the optimal detection channel of a different fluorophore. Spillover is a concern in flow cytometry, as it can make fluorescent signatures difficult...

Challenges with Secondary Detection

Challenges with Secondary Detection

Selecting the right secondary antibodies, and optimizing them for use, is essential for reliable immunoassay data.   When developing an immunoassay, researchers typically pay close attention to primary antibodies, carefully scrutinizing the product datasheets for...

Validation of Antibodies for Flow Cytometry

Validation of Antibodies for Flow Cytometry

Application-specific validation is critical for reproducible results   Antibodies are essential tools for a broad range of research techniques. However, for data to be both accurate and reproducible, antibodies should be thoroughly validated for each of the...

Dyes for Cell Cycle and Apoptosis Analysis

Dyes for Cell Cycle and Apoptosis Analysis

Aberrant cell proliferation and cell death underlie a multitude of disease states Normal tissue homeostasis depends on a critical balance between cell proliferation and cell death. The cell cycle regulates the former, while the latter occurs via controlled...

Intravital Microscopy – Explained

Intravital Microscopy – Explained

Intravital microscopy has vast potential to reveal hidden cellular mechanisms   Intravital microscopy (IVM) is a term used to describe the direct visualization of cells and tissues within a living organism. It was first reported in the 17th century, shortly after...

Mass Cytometry – Explained

Mass Cytometry – Explained

The use of mass cytometry is growing and includes its adoption for clinical applications Mass cytometry is a variation of flow cytometry that uses antibodies labeled with metal tags rather than fluorophores. Also known as CyTOF® flow cytometry, in deference to...

Choosing the Right Fluorescent Immunoassay for Your Research

Choosing the Right Fluorescent Immunoassay for Your Research

Fluorescent immunoassays meet different experimental needs   When immunoassays such as western blot and enzyme-linked immunosorbent assay (ELISA) were first reported, they typically produced either a radiometric or chromogenic signal. However, many common...

Staining Strategies for Intracellular Flow Cytometry

Staining Strategies for Intracellular Flow Cytometry

By measuring intracellular proteins with flow cytometry, researchers can better understand cell signaling and functional responses in conditions of health and disease   Flow cytometry is widely used for identifying different cell types based on the expression of...

Guide To Selecting Fluorophores for ICC and IHC

Guide To Selecting Fluorophores for ICC and IHC

Choosing the right fluorophores for microscopy-based research is critical for accurate results Using fluorescent reagents for microscopy-based research offers several advantages. Not only does fluorescent detection enable multiplexing, which can be especially useful...

Flow Cytometry Troubleshooting Guide

Flow Cytometry Troubleshooting Guide

Common problems can often be addressed by optimizing experimental design   Flow cytometry is a technique for analyzing individual cells in suspension. It works by using a stream of fluid to direct the cells in single file past an interrogation point, where one or...

Viability Dye Selection Guide

Viability Dye Selection Guide

Viability dyes are critical controls for proper flow analysis. The presence of dead cells can result in unwanted autofluorescence, cell aggregation, non-specific antibody binding, and a compromised capacity for RNA/DNA to proliferate in downstream applications. These...

Tips to Optimize Your Fluorescent Western Blot Protocol

Tips to Optimize Your Fluorescent Western Blot Protocol

Fluorescent western blot detection can offer many advantages provided protocols are carefully optimized   While it was once common for researchers to use enzyme-labeled antibodies and chemiluminescent substrates to develop western blots to film, there has been a...

Panel Design for Spectral Flow Cytometry

Panel Design for Spectral Flow Cytometry

Spectral cytometry offers increased flexibility for fluorophore selection but researchers should still apply best practices for panel design.   It has been almost 20 years since spectral cytometry was first described by the Robinson group at Purdue University...